A plea for caution before changing bacterial names in databases
128 Comments
M
Marie-Laurence Baille
2 days ago
because incorrect names in databases can lead to incorrect analysis with medical impact
J
Jose Gonzalez Hernandez
8 days ago
The continous name changing makes impossible to track and link previous research. Different names appear in different databases and tools; this makes reconciliation of outputs very difficult if at all possible. I am in favor of a cautious approach and will encourage everyone involved to work together to find a way to synchronize names across databases.
C
Carlos Martínez
18 days ago
This will simplify my work, avoid mistakes and make science more reproducible
S
Sasha Noscow
22 days ago
The best is the enemy of the good.
R
Robert Hamilton
23 days ago
The changes, while understandable from a perspective of pure phylogeny, offer no clinical value and confuse practitioners caring for patients. A system that does not conflate phylogenetic relationships and names should be created, similar to the common and scientific names of Animalia.
C
Cynthia Chappell
24 days ago
I support this proposal. Consistent nomenclature is essential to promoting good communications in clinical and research publications.
E
edoardo carretto
24 days ago
As director of a hospital clinical microbiology laboratory, I fully support this proposal. Clinical mycology shows what happens when nomenclatural changes reach the bench faster than consensus does. Recent fungal reclassifications include Candida glabrata → Nakaseomyces glabratus, C. krusei → Pichia kudriavzevii, C. lusitaniae → Clavispora lusitaniae, and the proposed Fusarium/Neocosmospora split. Fungi are governed by a different nomenclatural code, but the practical consequences are the same.
A
Aimee Ward
1 month ago
Since taxonomy is a human concept make to make the identification of organisms easier, its agreeable to actually make it easier.
T
Tatiana Stratulat
1 month ago
As a biotechnologist working with bacterial strains, stable nomenclature is essential for reliable strain identification, data traceability, and reproducibility of research.
I
Ihsanawati Ihsanawati
2 months ago
I agree with this plea, not to create other problem
F
Franca Rossi
2 months ago
Bacterial names are not only for taxonomista but also for medical and veterinary professionals who must rely on consistency in taxon identification in clinical samples in different historical periods
M
Muhammad Asif
2 months ago
Changing name should be avoided
J
Jan Gawor
2 months ago
I support this initiative. As a biotechnologist and microbiologist I must say that consistent nomenclature is essential in my field.
L
Lance van der Merwe
2 months ago
I am a Microbiology student and frequently use these databases, and any unnecessary change would be detrimental not just to my projects and workflow, but also have a massive impact on the workings of major clinical corporations
D
Daniel W
3 months ago
Many users of scientific names of bacteria, not least in the fields of
human and veterinary medicine, complain about frequent changes to these
names. The problem seems to occur more often in public databases than in
the literature. The petition attempts to persuade these databases to
take a more cautious approach.
R
Roland Sohmen
3 months ago
Communication between scientist of different fields will be serious hampered if frequent changes of bacterial names happens, especially in the field of medicine and occupatioanal health, e.g. Chlamydia to Chlamydophilia to Chlamydia. Candia auris to Candidozymas auris
H
Harriet Wilson
3 months ago
Rapid and accurate communication is essential for medical practitioners, while keeping pace with changes in prokaryotic taxonomy is not.
D
Dana Nováková
3 months ago
Taxon names change too frequently, and this adds no value.
J
John Turnidge
3 months ago
I have responsibility for certain documents created by EUCAST. Name changes are a constant headache
because incorrect names in databases can lead to incorrect analysis with medical impact
The continous name changing makes impossible to track and link previous research. Different names appear in different databases and tools; this makes reconciliation of outputs very difficult if at all possible. I am in favor of a cautious approach and will encourage everyone involved to work together to find a way to synchronize names across databases.
This will simplify my work, avoid mistakes and make science more reproducible
The best is the enemy of the good.
The changes, while understandable from a perspective of pure phylogeny, offer no clinical value and confuse practitioners caring for patients. A system that does not conflate phylogenetic relationships and names should be created, similar to the common and scientific names of Animalia.
I support this proposal. Consistent nomenclature is essential to promoting good communications in clinical and research publications.
As director of a hospital clinical microbiology laboratory, I fully support this proposal. Clinical mycology shows what happens when nomenclatural changes reach the bench faster than consensus does. Recent fungal reclassifications include Candida glabrata → Nakaseomyces glabratus, C. krusei → Pichia kudriavzevii, C. lusitaniae → Clavispora lusitaniae, and the proposed Fusarium/Neocosmospora split. Fungi are governed by a different nomenclatural code, but the practical consequences are the same.
Since taxonomy is a human concept make to make the identification of organisms easier, its agreeable to actually make it easier.
As a biotechnologist working with bacterial strains, stable nomenclature is essential for reliable strain identification, data traceability, and reproducibility of research.
I agree with this plea, not to create other problem
Bacterial names are not only for taxonomista but also for medical and veterinary professionals who must rely on consistency in taxon identification in clinical samples in different historical periods
Changing name should be avoided
I support this initiative. As a biotechnologist and microbiologist I must say that consistent nomenclature is essential in my field.
I am a Microbiology student and frequently use these databases, and any unnecessary change would be detrimental not just to my projects and workflow, but also have a massive impact on the workings of major clinical corporations
Many users of scientific names of bacteria, not least in the fields of human and veterinary medicine, complain about frequent changes to these names. The problem seems to occur more often in public databases than in the literature. The petition attempts to persuade these databases to take a more cautious approach.
Communication between scientist of different fields will be serious hampered if frequent changes of bacterial names happens, especially in the field of medicine and occupatioanal health, e.g. Chlamydia to Chlamydophilia to Chlamydia. Candia auris to Candidozymas auris
Rapid and accurate communication is essential for medical practitioners, while keeping pace with changes in prokaryotic taxonomy is not.
Taxon names change too frequently, and this adds no value.
I have responsibility for certain documents created by EUCAST. Name changes are a constant headache
Consultazione affidabile.