A plea for caution before changing bacterial names in databases
112 Comments
K
Kalyani Maitra
1 month ago
To maintain uniformity in the bacterial taxon identification.
N
Neža Čadež
1 month ago
As a yeast taxonomist, I struggle with genus name changes that are made without consensus within the yeast research community. Therefore, I fully support the conservation of genus names and a consensus-based approach to any future bacterial genus name changes.
J
José Santos
1 month ago
As an Actinomycetota expert, I urge caution before modifying taxonomic names. These bacteria depend on stable nomenclature for vital scientific work, which can be disrupted. Moreover, name modification can obscure literature searches and fracture genomic datasets.
K
Katalin Kiss
1 month ago
we cannot change labels and product sheets once a product is made and distributed. These name changes create a risk for end users!
J
Jose Miguel Lopez-Coronao
1 month ago
Bacterial name changes arise from developments in the study of bacterial taxonomy, but the implications for human and animal health should be considered before a name change is made.
D
David Ellis
1 month ago
Nomenclature of microorganisms is essential for clinical practice, diagnostic accuracy, patient safety, and the payment of healthcare services. I support this initiative because changes should be made prudently - as much as necessary, as little as possible.
L
Learn-Han Lee
1 month ago
I support this petition.
P
Patrick Mc Gann
1 month ago
It can be extremely problematic when new names are assigned on a whim and without going through the proper channels. This petition is a step in the right direction!
M
Michael Arabatzis
1 month ago
I often meet useful sites such as NCBI Taxonomy adopting the newest nomenclature proposals before a general consensus
L
Lucas Domínguez
1 month ago
Markus Göker, thank you very much for this initiative. It was becoming much needed at this point.
I
Ian Laurenson
1 month ago
As a clinical microbiologist and infection specialist this is a real issue and often leads to unecessary confusion and risks, eg in the field of mycobacteriology.
R
Renata Safrankova
1 month ago
I fully support this initiative — it's very useful!
K
Katja Strašek Smrdel
1 month ago
I daily use NCBI database for 16s rRNA sanger sequencing and compare results with cultivation of bacteria. Sometimes I find discrepancies in NCBI names and valid names. We use 16S sequencing in routine diagnostics.
C
Chris Field
1 month ago
Renaming taxa only serves a purpose when an organism has been reclassified, otherwise it's just adding confusion to an already complicated system. Established names should be kept wherever possible.
P
Peter Michael Keller
1 month ago
Frequent, often unnecessary changes of bacterial names in public databases such as GenBank create significant practical burdens in clinical diagnostics. They require time-consuming updates of laboratory SOPs, informatics systems (LIS), reports, and internal databases, while increasing the risk of communication errors between clinicians, laboratories, and regulatory bodies.
Name changes also affect EUCAST/CLSI breakpoints, national risk group classifications, diagnostic regulations, and GMP.
G
Gisli Einarsson
1 month ago
Clarity must outweigh confusion. While taxonomy should evolve with new evidence, changes to clinically relevant bacterial names should be carefully considered to preserve consistency, traceability, and clear communication between laboratories, researchers, and clinicians.
A
Aliyu Dabai
1 month ago
The petition is important to me as a microbiologist
G
Geertje Van Keulen
1 month ago
Legally important regulations depend on consistent namegiving.
S
Sheila Patrick
1 month ago
The committee to mitigate changes in prokaryotic nomenclature was set up as a result of a @Microbiology Society supported meeting I organised in 2023 https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006844. As a founding member of the committee I strongly support this initiative which is so important for all practical microbiology, be it medical, agricultural, ecological or industrial
G
Garrett Gordy
1 month ago
It’s way to hard to keep up and it is confusing for clinicians and labs alike
To maintain uniformity in the bacterial taxon identification.
As a yeast taxonomist, I struggle with genus name changes that are made without consensus within the yeast research community. Therefore, I fully support the conservation of genus names and a consensus-based approach to any future bacterial genus name changes.
As an Actinomycetota expert, I urge caution before modifying taxonomic names. These bacteria depend on stable nomenclature for vital scientific work, which can be disrupted. Moreover, name modification can obscure literature searches and fracture genomic datasets.
we cannot change labels and product sheets once a product is made and distributed. These name changes create a risk for end users!
Bacterial name changes arise from developments in the study of bacterial taxonomy, but the implications for human and animal health should be considered before a name change is made.
Nomenclature of microorganisms is essential for clinical practice, diagnostic accuracy, patient safety, and the payment of healthcare services. I support this initiative because changes should be made prudently - as much as necessary, as little as possible.
I support this petition.
It can be extremely problematic when new names are assigned on a whim and without going through the proper channels. This petition is a step in the right direction!
I often meet useful sites such as NCBI Taxonomy adopting the newest nomenclature proposals before a general consensus
Markus Göker, thank you very much for this initiative. It was becoming much needed at this point.
As a clinical microbiologist and infection specialist this is a real issue and often leads to unecessary confusion and risks, eg in the field of mycobacteriology.
I fully support this initiative — it's very useful!
I daily use NCBI database for 16s rRNA sanger sequencing and compare results with cultivation of bacteria. Sometimes I find discrepancies in NCBI names and valid names. We use 16S sequencing in routine diagnostics.
Renaming taxa only serves a purpose when an organism has been reclassified, otherwise it's just adding confusion to an already complicated system. Established names should be kept wherever possible.
Frequent, often unnecessary changes of bacterial names in public databases such as GenBank create significant practical burdens in clinical diagnostics. They require time-consuming updates of laboratory SOPs, informatics systems (LIS), reports, and internal databases, while increasing the risk of communication errors between clinicians, laboratories, and regulatory bodies. Name changes also affect EUCAST/CLSI breakpoints, national risk group classifications, diagnostic regulations, and GMP.
Clarity must outweigh confusion. While taxonomy should evolve with new evidence, changes to clinically relevant bacterial names should be carefully considered to preserve consistency, traceability, and clear communication between laboratories, researchers, and clinicians.
The petition is important to me as a microbiologist
Legally important regulations depend on consistent namegiving.
The committee to mitigate changes in prokaryotic nomenclature was set up as a result of a @Microbiology Society supported meeting I organised in 2023 https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijsem.0.006844. As a founding member of the committee I strongly support this initiative which is so important for all practical microbiology, be it medical, agricultural, ecological or industrial
It’s way to hard to keep up and it is confusing for clinicians and labs alike